Rank nsSNPs According to Specific Disease Concepts

Enter Your Mutations:

Overview:


Our disease-specific algortihm is an experimental method for ranking protein missense mutations according to seventeen disease concepts. Variants with a higher likelihood of being associated with the disease of interest are ranked higher than those variants which are unlikely to be associated with the disease of interest.

For more information, please refer to the following publication:


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Input Format:


Our software and server accepts one of the following formats (see here for annotating VCF files):

  • <protein> <substitution>
  • dbSNP rs identifiers

Where <protein> is the protein identifier and <substitution> is the amino acid substitution in the conventional one letter format. Multiple substitutions can be entered on a single line and should be separated by a comma. Our server accepts SwissProt/TrEMBL, RefSeq and Ensembl protein identifiers, e.g.:

P43026 L441P
ENSP00000325527 N548I,E1073K,C2307S 


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Prediction Score:


Our disease-specific predictions are still experimental; therefore, we have not defined clear prediction thresholds for identifying whether a mutation is associated with your disease of interest or not. However, predictions scoring less than zero indicate that there is a chance the mutation is associated with your disease of interest, with lower scores indicating increased confidence in the association.


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